Mesoscale brain explorer, a flexible python-based image analysis and visualization tool
نویسندگان
چکیده
منابع مشابه
Python based 4D Visualization Environment
One of the challenges in 4D math visualization is to develop an interactive and integrated computational environment to quick-prototype, simulate, and experiment with the abstract mathematical concepts. We have investigated several areas in 4D visualization, including 4D surface rendering, various user interface elements to manipulate mathematical objects in the higherdimensional space, and phy...
متن کاملA Python Based 4D Visualization Environment
One of the challenges in 4D math visualization is to develop an interactive and integrated computational environment to quick-prototype, simulate, and experiment with the abstract mathematical concepts. We have investigated several areas in 4D visualization including 4D surface rendering, various user interface elements to manipulate mathematical objects in the higher-dimensional space, and phy...
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The measurement of activity in vivo and in vitro has shifted from electrical to optical methods. While the indicators for imaging activity have improved significantly over the last decade, tools for analysing optical data have not kept pace. Most available analysis tools are limited in their flexibility and applicability to datasets obtained at different spatial scales. Here, we present SamuROI...
متن کاملPopulationProfiler: A Tool for Population Analysis and Visualization of Image-Based Cell Screening Data
Image-based screening typically produces quantitative measurements of cell appearance. Large-scale screens involving tens of thousands of images, each containing hundreds of cells described by hundreds of measurements, result in overwhelming amounts of data. Reducing per-cell measurements to the averages across the image(s) for each treatment leads to loss of potentially valuable information on...
متن کاملcyvcf2: fast, flexible variant analysis with Python
Motivation Variant call format (VCF) files document the genetic variation observed after DNA sequencing, alignment and variant calling of a sample cohort. Given the complexity of the VCF format as well as the diverse variant annotations and genotype metadata, there is a need for fast, flexible methods enabling intuitive analysis of the variant data within VCF and BCF files. Results We introdu...
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ژورنال
عنوان ژورنال: Neurophotonics
سال: 2017
ISSN: 2329-423X
DOI: 10.1117/1.nph.4.3.031210